PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G411000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 328aa    MW: 34299.4 Da    PI: 7.0576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G411000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-1865113355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Sobic.002G411000.1.p  65 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 113
                           56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.54764121IPR001471AP2/ERF domain
SMARTSM003801.4E-2964127IPR001471AP2/ERF domain
CDDcd000185.42E-2664120No hitNo description
Gene3DG3DSA:3.30.730.105.5E-2865121IPR001471AP2/ERF domain
PRINTSPR003671.2E-76576IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2065122IPR016177DNA-binding domain
PfamPF008472.9E-1167113IPR001471AP2/ERF domain
PRINTSPR003671.2E-787103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMNTRGSGSG SSSGSNQTMM AFSDHPPKPA TAASGGQPQP SPPSSPSERP PAGRGRRRAQ  60
EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAQEA ALAYDRAALS MKGAQARTNF  120
VYTHAAYNYP PFLAPFHHGQ QPSSYAHAPS SVQHQYGGGV GAGAPHIASY GHHHYHHQAG  180
SASAAAAGGA SSGECSSTMP VPVERADGTL LLDRSGGGHH HHHEFLFASA DDNSGYLSSV  240
VPESCLRPRS SAAAVEDLRR YSDADAYGMG MGLREDVDDL AQMVAGFWGG AGDADQLCGF  300
PSGGAGDSMV ASSQGSDGYS PFSFLSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1765120662ATERF1
3gcc_A2e-1765120662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1781911e-162AY178191.1 Zea mays branched silkless1 (bd1) mRNA, complete cds.
GenBankAY1960031e-162AY196003.1 Zea mays branched silkless1 mRNA, complete cds.
GenBankEU9695571e-162EU969557.1 Zea mays clone 332110 branched silkless1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463362.11e-154hypothetical protein SORBIDRAFT_02g042400
TrEMBLC5X4X11e-154C5X4X1_SORBI; Putative uncharacterized protein Sb02g042400
STRINGSb02g042400.11e-154(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-34ERF family protein